PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g10960.1
Common NameLR48_Vigan07g119900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 248aa    MW: 27771.1 Da    PI: 5.9111
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g10960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-08202227126
                      TSSS-HHHHHHHHHHHHHTTTT-HHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWkt 26 
                      r +W+++Ed++l dav+++G g+W+t
   Vang01g10960.1 202 REPWSEQEDLQLRDAVQRWGEGNWAT 227
                      789*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.679197247IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-8197235IPR009057Homeodomain-like
SuperFamilySSF466891.08E-6199243IPR009057Homeodomain-like
PfamPF002491.4E-6202227IPR001005SANT/Myb domain
CDDcd116605.34E-8204244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
LQLPFDPMAK EVNKQRRVKV PFSAEDTASL LQRYDAPTVL TLLQELANYP YSKFNWNDLA  60
AKTSTGISNA REYQMLWRHL AYGHSMANLD DDAQPLDDDS DLESEREPLP RLNRETATEA  120
AAFVKVIMAS FKLGESSATS SVIQAPLTIN TPSTIDKNES SSNTDIIFPV TVKRQTLPNT  180
SSTRVVEGNG SVRSSTSIKK KREPWSEQED LQLRDAVQRW GEGNWATMIK KDDFPIKRST  240
SQLSKVF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522432.11e-160PREDICTED: telomeric repeat-binding factor 1-like
TrEMBLA0A0L9UXD01e-177A0A0L9UXD0_PHAAN; Uncharacterized protein
STRINGGLYMA02G37841.11e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-47MYB_related family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]